{"id":927,"date":"2018-07-02T19:18:10","date_gmt":"2018-07-02T19:18:10","guid":{"rendered":"https:\/\/www.studyorgo.com\/blog\/?p=927"},"modified":"2018-07-02T19:18:10","modified_gmt":"2018-07-02T19:18:10","slug":"how-to-assign-stereoisomer-configuration","status":"publish","type":"post","link":"https:\/\/www.studyorgo.com\/blog\/how-to-assign-stereoisomer-configuration\/","title":{"rendered":"How to Assign Stereoisomer Configuration"},"content":{"rendered":"<p>Chirality is an important aspect of life.\u00a0 This is so because many of metabolites used in living cells, in particular amino acids that form enzymes, are also chiral. Chirality contributes asymmetry to molecules, allowing them the ability to recognize \u201chandedness\u201d and further add to the complexity and specificity of reactions. Organic chemists must pay constant attention to the chirality of molecules both before and after reactions, less the compounds lose their biological or chemical activity.<\/p>\n<p><em>We at StudyOrgo have developed clear cut explanations of Orgo Chem material for students to maximize your time studying and learn these difficult concepts quickly and easily. Sign up with StudyOrgo.com today for all of your organic chemistry studying needs!<\/em><\/p>\n<p>Molecules, like your hands, that are not superimposable on their mirror images are called <strong>chiral\u00a0<\/strong>objects, from the Greek word cheir\u00a0 (meaning \u201chand\u201d). <strong>All 3D objects can be\u00a0<\/strong><strong>categorized as either chiral or achiral.<\/strong>\u00a0Chemical molecules are 3D objects and can also be classified in this way. To help you remember, chiral molecules are like hands and are NOT superimposable on its mirror image while achiral molecules are like tennis rackets: they are superimposable on their mirror images.<\/p>\n<p>IUPAC recommended in 1996 that a tetrahedral carbon bearing four different groups be called a <strong>chirality center<\/strong>.\u00a0 Many other names are commonly used include <strong>chiral center, stereocenter, stereogenic cente<\/strong>r, and <strong>asymmetric center<\/strong>.\u00a0 They all mean the same thing, a carbon connected to 4 unique substituents that is not superimposable on its mirror image.<\/p>\n<p>When a compound is chiral, it will have one opposite molecule; a non-superimposable mirror image, called its <strong>enantiomer<\/strong> (from the Greek word meaning \u201copposite\u201d). The compound and its mirror image are said to be a pair of enantiomers. The word \u201cenantiomer\u201d is analogous to the word \u201ctwin\u201d. When two children are identical twins, each one is said to be the (&#8220;evil&#8230;&#8221;) twin of the other. Similarly, when two compounds are a pair of enantiomers, each compound is said to be the enantiomer of the other.\u00a0 A chiral compound will have exactly one <strong>enantiomer<\/strong>s, all other molecules with the same molecular formula and constitutional arrangement are <strong>diastereomers<\/strong>, but are only seen when there are more than two chiral centers in a molecule.<\/p>\n<p>In order to determine whether the stereocenter\u00a0is in the R or S configuration, there are a series of steps to follow.<\/p>\n<p><strong>1. Identify the stereocenter<\/strong> as 4 unique substituents attached to the chiral center<\/p>\n<ul>\n<li>This one is easy for most, but just look for any carbon with 4 substituents that are different. \u00a0Be careful to carefully count chain lengths and identify unique elements.<\/li>\n<\/ul>\n<p><strong>2. Assign priority<\/strong><\/p>\n<ul>\n<li>Step 1: Assign priority of bond based on atom atomic number of the element, highest (1) to lowest (4) weight.<img loading=\"lazy\" class=\"wp-image-929 aligncenter\" src=\"https:\/\/www.studyorgo.com\/blog\/wp-content\/uploads\/2018\/06\/counting-2.gif\" alt=\"\" width=\"474\" height=\"202\" \/><\/li>\n<li>Step 2: If two atoms are same, count the type of bonds connected to the carbon to find first point of difference<\/li>\n<li>For 2-methyl-3-pantanol, oxygen is highest priority and hydrogen is lowest priority. However, 2 carbons are connected to the stereocenter, therefore count the number of bonds connected to each carbon center. In this case, the carbon with 2C and 1H has higher priority than the carbon with 1C and 2H.<a href=\"https:\/\/www.studyorgo.com\/blog\/wp-content\/uploads\/2018\/06\/counting.gif\"><img loading=\"lazy\" class=\"aligncenter wp-image-928\" src=\"https:\/\/www.studyorgo.com\/blog\/wp-content\/uploads\/2018\/06\/counting.gif\" alt=\"\" width=\"336\" height=\"507\" \/><\/a><\/li>\n<li>For the haloalkane, oxygen is highest priority and hydrogen is lowest priority. However, 2 carbons are connected to the stereocenter, therefore count the number of bonds connected to each carbon center. In this case, the carbon with 1Br and 2C is higher priority than the carbon with 1F, 1Cl and 1C because Br is the heaviest and highest priority element.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><strong>3. Rotate the molecule<\/strong> so that Priority 4 atom is in the hashed wedge position.<\/p>\n<ul>\n<li>In some cases, if you can\u2019t flip the molecule in your head or on paper easily, assign the configuration to the stereocenter when the 4<sup>th<\/sup> position is NOT in the back of the paper position, and just reverse the assignment.\u00a0 It works every time.<\/li>\n<\/ul>\n<p><a href=\"https:\/\/www.studyorgo.com\/blog\/wp-content\/uploads\/2018\/06\/counting-3.gif\"><img loading=\"lazy\" class=\"aligncenter wp-image-930\" src=\"https:\/\/www.studyorgo.com\/blog\/wp-content\/uploads\/2018\/06\/counting-3.gif\" alt=\"\" width=\"421\" height=\"117\" \/><\/a><\/p>\n<p><strong>4. Determine the Priority sequence<\/strong> 1-2-3 rotates to the left (S) or the right (R).<\/p>\n<p>&nbsp;<\/p>\n<p>Lastly, an important concept to keep in mind is that as molecules become more complex, they also can acquire more stereocenters.\u00a0 Keeping in mind that each stereocenter can produce 2 stereoisomers, we describe possible stereoisomerism using the 2<sup>n<\/sup> rule. Let\u2019s examine a molecule with 2 stereocenters, following the 2n rule that gives us 2<sup>2<\/sup>=4 stereocenters.\u00a0 The possible combinations are listed below.<\/p>\n<p><a href=\"https:\/\/www.studyorgo.com\/blog\/wp-content\/uploads\/2018\/06\/counting-4.png\"><img loading=\"lazy\" class=\"aligncenter wp-image-931\" src=\"https:\/\/www.studyorgo.com\/blog\/wp-content\/uploads\/2018\/06\/counting-4.png\" alt=\"\" width=\"623\" height=\"461\" srcset=\"https:\/\/www.studyorgo.com\/blog\/wp-content\/uploads\/2018\/06\/counting-4.png 1750w, https:\/\/www.studyorgo.com\/blog\/wp-content\/uploads\/2018\/06\/counting-4-300x222.png 300w, https:\/\/www.studyorgo.com\/blog\/wp-content\/uploads\/2018\/06\/counting-4-768x569.png 768w, https:\/\/www.studyorgo.com\/blog\/wp-content\/uploads\/2018\/06\/counting-4-1024x758.png 1024w\" sizes=\"(max-width: 623px) 100vw, 623px\" \/><\/a><\/p>\n<p>We now introduce the last concept to stereochemistry which is the difference between enantiomers and diastereomers.\u00a0 <strong><em><u>Enantiomers<\/u><\/em><\/strong> are molecules with <strong>exactly opposite<\/strong> stereoisomers.\u00a0 For example, the enantiomer of the molecule with stereochemistry R,R would be S,S.\u00a0 The relationship between molecule R,R and R,S is what is described as <strong><em><u>diastereomers<\/u><\/em><\/strong>, which <strong>differ in some but not<\/strong> all stereocenters.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Chirality is an important aspect of life.\u00a0 This is so because many of metabolites used in living cells, in particular amino acids that form enzymes, are also chiral. Chirality contributes asymmetry to molecules, allowing them the ability to recognize \u201chandedness\u201d and further add to the complexity and specificity of reactions. Organic chemists must pay constant [&hellip;]<\/p>\n","protected":false},"author":7,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_mi_skip_tracking":false},"categories":[1],"tags":[107,106,103,105,104,102],"_links":{"self":[{"href":"https:\/\/www.studyorgo.com\/blog\/wp-json\/wp\/v2\/posts\/927"}],"collection":[{"href":"https:\/\/www.studyorgo.com\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.studyorgo.com\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.studyorgo.com\/blog\/wp-json\/wp\/v2\/users\/7"}],"replies":[{"embeddable":true,"href":"https:\/\/www.studyorgo.com\/blog\/wp-json\/wp\/v2\/comments?post=927"}],"version-history":[{"count":6,"href":"https:\/\/www.studyorgo.com\/blog\/wp-json\/wp\/v2\/posts\/927\/revisions"}],"predecessor-version":[{"id":938,"href":"https:\/\/www.studyorgo.com\/blog\/wp-json\/wp\/v2\/posts\/927\/revisions\/938"}],"wp:attachment":[{"href":"https:\/\/www.studyorgo.com\/blog\/wp-json\/wp\/v2\/media?parent=927"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.studyorgo.com\/blog\/wp-json\/wp\/v2\/categories?post=927"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.studyorgo.com\/blog\/wp-json\/wp\/v2\/tags?post=927"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}